Publications

Matthew Scicluna, Jean-Christophe Grenier, Raphaël Poujol, Sébastien Lemieux, G Julie Hussin (2023). Toward computing attributions for dimensionality reduction techniques. Bioinformatics Advances.

Jérémie Zumer, Sébastien Lemieux (2023). Pepid - a Highly Modifiable Bioinformatics-Oriented Peptide Search Engine.

Jérémie Zumer, Sébastien Lemieux (2023). Mining Mass Spectra for Peptide Facts.

Maria Virginia Ruiz Cuevas, Marie-Pierre Hardy, Jean-David Larouche, Anca Apavaloaei, Eralda Kina, Krystel Vincent, Patrick Gendron, Jean-Philippe Laverdure, Chantal Durette, Pierre Thibault, Sébastien Lemieux, Claude Perreault, Gregory Ehx (2023). BamQuery - a proteogenomic tool to explore the immunopeptidome and prioritize actionable tumor antigens. Genome Biology.

Assya Trofimov, Philippe Brouillard, Jean-David Larouche, Jonathan Séguin, Jean-Philippe Laverdure, Ann Brasey, Gregory Ehx, Denis-Claude Roy, Lambert Busque, Silvy Lachance, Sébastien Lemieux, Claude Perreault (2022). Two types of human TCR differentially regulate reactivity to self and non-self antigens. iScience.

Gregory Ehx, Krystel Vincent, Jean-David Larouche, Chantal Durette, Jean-Philippe Laverdure, Joël Lanoix, Éric Bonneil, Marie-Pierre Hardy, Caroline Côté, Nandita Noronha, Leslie Hesnard, Qingchuan Zhao, M Céline Laumont, Sébastien Lemieux, Pierre Thibault, Claude Perreault (2022). The tumor-specific antigen landscape of acute myeloid leukemia. Molecular Immunology.

Zhaoguan Wu, Éric Bonneil, Michael Belford, Cornelia Boeser, Maria Virginia Ruiz Cuevas, Sébastien Lemieux, Jean-Jacques Dunyach, Pierre Thibault (2022). Proteogenomics and Differential Ion Mobility Enable the Exploration of the Mutational Landscape in Colon Cancer Cells. Analytical Chemistry.

T. F. Diogo Veiga, Mathieu Tremblay, Bastien Gerby, Sabine Herblot, André Haman, Patrick Gendron, Sébastien Lemieux, Carlos Juan Zúñiga-Pflücker, Josée Hébert, Paul Joseph Cohen, Trang Hoang (2022). Monoallelic Heb/Tcf12 Deletion Reduces the Requirement for NOTCH1 Hyperactivation in T-Cell Acute Lymphoblastic Leukemia. Frontiers in Immunology.

Léonard Sauvé, Josée Hébert, Guy Sauvageau, Sébastien Lemieux (2022). Baseline Acute Myeloid Leukemia Prognosis Models using Transcriptomic and Clinical Profiles by Studying the Impacts of Dimensionality Reductions and Gene Signatures on Cox-Proportional Hazard.

Valérie Janelle, Mathieu Neault, Marie-Ève Lebel, Maurice Dave Sousa De, Salix Boulet, Ludovic Durrieu, Cédric Carli, Chloé Muzac, Sébastien Lemieux, Nathalie Labrecque, J. Heather Melichar, A. Frédérick Mallette, Jean-Sébastien Delisle (2021). p16INK4a Regulates Cellular Senescence in PD-1-Expressing Human T Cells. Frontiers in Immunology.

Maria Virginia Ruiz Cuevas, Marie-Pierre Hardy, Jaroslav Hollý, Éric Bonneil, Chantal Durette, Mathieu Courcelles, Joël Lanoix, Caroline Côté, M. Louis Staudt, Sébastien Lemieux, Pierre Thibault, Claude Perreault, W. Jonathan Yewdell (2021). Most non-canonical proteins uniquely populate the proteome or immunopeptidome. Cell Reports.

Michael Lang, Sébastien Lemieux, Josée Hébert, Guy Sauvageau, H. Ma'n Zawati (2021). Legal and Ethical Considerations for the Design and Use of Web Portals for Researchers Clinicians and Patients - Scoping Literature Review. Journal of Medical Internet Research.

Tariq Daouda, Maude Dumont-Lagacé, Albert Feghaly, Yahya Benslimane, Rébecca Panes, Mathieu Courcelles, Mohamed Benhammadi, Lea Harrington, Pierre Thibault, François Major, Yoshua Bengio, Étienne Gagnon, Sébastien Lemieux, Claude Perreault (2021). CAMAP - Artificial neural networks unveil the role of codon arrangement in modulating MHC-I peptides presentation. PLOS Computational Biology.

Jean-David Larouche, Assya Trofimov, Leslie Hesnard, Gregory Ehx, Qingchuan Zhao, Krystel Vincent, Chantal Durette, Patrick Gendron, Jean-Philippe Laverdure, Éric Bonneil, Caroline Côté, Sébastien Lemieux, Pierre Thibault, Claude Perreault (2020). Widespread and tissue-specific expression of endogenous retroelements in human somatic tissues. Genome Medicine.

Valérie Camille Jamblinne De, Barbara Decelle, Mehrnoush Dehghani, Mathieu Joseph, Neera Sriskandarajah, Kévin Leguay, Basile Rambaud, Sébastien Lemieux, P. Philippe Roux, R. David Hipfner, Sébastien Carréno (2020). STRIPAK regulates Slik localization to control mitotic morphogenesis and epithelial integrity. Journal of Cell Biology.

Maude Dumont-Lagacé, Tariq Daouda, Lucyle Depoërs, Jérémie Zumer, Yahya Benslimane, Sylvie Brochu, Lea Harrington, Sébastien Lemieux, Claude Perreault (2020). Qualitative Changes in Cortical Thymic Epithelial Cells Drive Postpartum Thymic Regeneration. Frontiers in Immunology.

Qingchuan Zhao, Jean-Philippe Laverdure, Joël Lanoix, Chantal Durette, Caroline Côté, Éric Bonneil, M. Céline Laumont, Patrick Gendron, Krystel Vincent, Mathieu Courcelles, Sébastien Lemieux, G. Douglas Millar, S. Pamela Ohashi, Pierre Thibault, Claude Perreault (2020). Proteogenomics Uncovers a Vast Repertoire of Shared Tumor-Specific Antigens in Ovarian Cancer. Cancer Immunology Research.

Mathieu Courcelles, Chantal Durette, Tariq Daouda, Jean-Philippe Laverdure, Krystel Vincent, Sébastien Lemieux, Claude Perreault, Pierre Thibault (2020). MAPDP - A Cloud-Based Computational Platform for Immunopeptidomics Analyses. Journal of Proteome Research.

Laura Simon, Jean-François Spinella, Chi-Yuan Yao, Vincent-Philippe Lavallée, Isabel Boivin, Geneviève Boucher, Éric Audemard, Marie-Eve Bordeleau, Sébastien Lemieux, Josée Hébert, Guy Sauvageau (2020). High frequency of germline RUNX1 mutations in patients with RUNX1-mutated AML. Blood.

Sandra Cohen, Jean Roy, Silvy Lachance, Jean-Sébastien Delisle, Anne Marinier, Lambert Busque, Denis-Claude Roy, Frédéric Barabé, Imran Ahmad, Nadia Bambace, Léa Bernard, Thomas Kiss, Philippe Bouchard, Pierre Caudrelier, Sévérine Landais, Fannie Larochelle, Jalila Chagraoui, Bernhard Lehnertz, Sophie Corneau, Elisa Tomellini, van A. J. Jeroen Kampen, J. Jan Cornelissen, Maude Dumont-Lagacé, Mégane Tanguay, Qi Li, Sébastien Lemieux, W. Peter Zandstra, Guy Sauvageau (2020). Hematopoietic stem cell transplantation using single UM171-expanded cord blood - a single-arm phase 1–2 safety and feasibility study. The Lancet Haematology.

Assya Trofimov, Paul Joseph Cohen, Yoshua Bengio, Claude Perreault, Sébastien Lemieux (2020). Factorized embeddings learns rich and biologically meaningful embedding spaces using factorized tensor decomposition. Bioinformatics.

Mandana Samiei, Tobias Würfl, Tristan Deleu, Martin Weiss, Francis Dutil, Thomas Fevens, Geneviève Boucher, Sébastien Lemieux, Paul Joseph Cohen (2019). The TCGA Meta-Dataset Clinical Benchmark.

Éric Audemard, Patrick Gendron, Albert Feghaly, Vincent-Philippe Lavallée, Josée Hébert, Guy Sauvageau, Sébastien Lemieux (2019). Targeted variant detection using unaligned RNA-Seq reads. Life Science Alliance.

Irène Baccelli, Yves Gareau, Bernhard Lehnertz, Stéphane Gingras, Jean-François Spinella, Sophie Corneau, Nadine Mayotte, Simon Girard, Mélanie Frechette, Valérie Blouin-Chagnon, Koryne Leveillé, Isabel Boivin, Tara Macrae, Jana Krosl, Clarisse Thiollier, Vincent-Philippe Lavallée, Evgeny Kanshin, Thierry Bertomeu, Jasmin Coulombe-Huntington, Corinne St-Denis, Marie-Eve Bordeleau, Geneviève Boucher, P. Philippe Roux, Sébastien Lemieux, Mike Tyers, Pierre Thibault, Josée Hébert, Anne Marinier, Guy Sauvageau (2019). Mubritinib Targets the Electron Transport Chain Complex I and Reveals the Landscape of OXPHOS Dependency in Acute Myeloid Leukemia. Cancer Cell.

Caroline Labelle, Anne Marinier, Sébastien Lemieux (2019). Enhancing the drug discovery process - Bayesian inference for the analysis and comparison of dose–response experiments. Bioinformatics.

Céline Moison, Vincent-Philippe Lavallée, Clarisse Thiollier, Bernhard Lehnertz, Isabel Boivin, Nadine Mayotte, Yves Gareau, Mélanie Frechette, Valérie Blouin-Chagnon, Sophie Corneau, Sylvie Lavallée, Sébastien Lemieux, Anne Marinier, Josée Hébert, Guy Sauvageau (2019). Complex karyotype AML displays G2/M signature and hypersensitivity to PLK1 inhibition. Blood Advances.

Vincent-Philippe Lavallée, Jalila Chagraoui, Tara Macrae, Miriam Marquis, Arnaud Bonnefoy, Jana Krosl, Sébastien Lemieux, Anne Marinier, Caroline Pabst, Georges-Étienne Rivard, Josée Hébert, Guy Sauvageau (2018). Transcriptomic landscape of acute promyelocytic leukemia reveals aberrant surface expression of the platelet aggregation agonist Podoplanin. Leukemia.

Trofimov Assya, Dutil Francis, Perreault Claude, Lemieux Sebastien, Bengio Yoshua, Cohen Joseph Paul (2018). Towards the Latent Transcriptome.

Olivier Eric Audemard, Patrick Gendron, Vincent-Philippe Lavallée, Josée Hébert, Guy Sauvageau, Sébastien Lemieux (2018). Target variant detection in leukemia using unaligned RNA-Seq reads.

Tariq Daouda, Jérémie Zumer, Claude Perreault, Sébastien Lemieux (2018). Holographic Neural Architectures.

Assya Trofimov, Sébastien Lemieux, Claude Perreault (2017). Warp - a method for neural network interpretability applied to gene expression profiles.

Lemieux Sebastien, Sargeant Tobias, Laperrière David, Ismail Houssam, Boucher Geneviève, Rozendaal Marieke, Lavallée Vincent-Philippe, Ashton-Beaucage Dariel, Wilhelm Brian, Hébert Josée, Mader Sylvie, Sauvageau Guy (2017). MiSTIC an integrated platform for the analysis of heterogeneity in large tumour transcriptome datasets. Nucleic Acids Research.

Maude Dumont-Lagacé, Hervé Gerbe, Tariq Daouda, Jean-Philippe Laverdure, Sylvie Brochu, Sébastien Lemieux, Étienne Gagnon, Claude Perreault (2017). Detection of Quiescent Radioresistant Epithelial Progenitors in the Adult Thymus. Frontiers in Immunology.

Laura Simon, Vincent-Philippe Lavallée, Marie-Eve Bordeleau, Jana Krosl, Irène Baccelli, Geneviève Boucher, Bernhard Lehnertz, Jalila Chagraoui, Tara Macrae, Réjean Ruel, Yves Chantigny, Sébastien Lemieux, Anne Marinier, Josée Hébert, Guy Sauvageau (2017). Chemogenomic Landscape of RUNX1-mutated AML Reveals Importance of RUNX1 Allele Dosage in Genetics and Glucocorticoid Sensitivity. Clinical Cancer Research.

The Theano Development Team, Al-Rfou Rami, Alain Guillaume, Almahairi Amjad, Angermueller Christof, Bahdanau Dzmitry, Ballas Nicolas, Bastien Frédéric, Bayer Justin, Belikov Anatoly, Belopolsky Alexander, Bengio Yoshua, Bergeron Arnaud, Bergstra James, Bisson Valentin, Snyder Josh Bleecher, Bouchard Nicolas, Boulanger-Lewandowski Nicolas, Bouthillier Xavier, de Brébisson Alexandre, Breuleux Olivier, Carrier Pierre-Luc, Cho Kyunghyun, Chorowski Jan, Christiano Paul, Cooijmans Tim, Côté Marc-Alexandre, Côté Myriam, Courville Aaron, Delalleau Olivier, Demouth Julien, Desjardins Guillaume, Dieleman Sander, Dinh Laurent, Ducoffe Mélanie, Dumoulin Vincent, Kahou Samira Ebrahimi, Erhan Dumitru, Fan Ziye, Firat Orhan, Germain Mathieu, Glorot Xavier, Goodfellow Ian, Graham Matt, Gulcehre Caglar, Hamel Philippe, Harlouchet Iban, Heng Jean-Philippe, Hidasi Balázs, Honari Sina, Jain Arjun, Jean Sébastien, Jia Kai, Korobov Mikhail, Kulkarni Vivek, Lamb Alex, Lamblin Pascal, Larsen Eric, Laurent César, Lee Sean, Lefrancois Simon, Lemieux Simon, Léonard Nicholas, Lin Zhouhan, Lorenz Cory, Lowin Jeremiah, Ma Qianli, Manzagol Pierre-Antoine, Mastropietro Olivier, Memisevic Roland, van Merriënboer Bart, Michalski Vincent, Mirza Mehdi, Orlandi Alberto, Pal Christopher, Pascanu Razvan, Pezeshki Mohammad, Raffel Colin, Renshaw Daniel, Rocklin Matthew, Romero Adriana, Roth Markus, Sadowski Peter, Salvatier John, Savard François, Schlüter Jan, Schulman John, Schwartz Gabriel, Serban Iulian Vlad, Serdyuk Dmitriy, Shabanian Samira, Simon Étienne, Spieckermann Sigurd, Subramanyam S. Ramana, Sygnowski Jakub, Tanguay Jérémie, van Tulder Gijs, Turian Joseph, Urban Sebastian, Vincent Pascal, Visin Francesco, de Vries Harm, Warde-Farley David, Willson Matthew, Xu Kelvin, Xue Lijun, Yao Li, Zhang Saizheng, Zhang Ying (2016). Theano - A Python framework for fast computation of mathematical expressions.

Vincent-Philippe Lavallée, Sébastien Lemieux, Geneviève Boucher, Patrick Gendron, Isabel Boivin, N. Richard Armstrong, Guy Sauvageau, Josée Hébert (2016). RNA-sequencing analysis of core binding factor AML identifies recurrent ZBTB7A mutations and defines RUNX1-CBFA2T3 fusion signature. Blood.

Tariq Daouda, Claude Perreault, Sébastien Lemieux (2016). pyGeno - A Python package for precision medicine and proteogenomics. F1000Research.

Caroline Labelle, Geneviève Boucher, Sébastien Lemieux (2016). myCircos - Facilitating the Creation and Use of Circos Plots Online.

M. Céline Laumont, Tariq Daouda, Jean-Philippe Laverdure, Éric Bonneil, Olivier Caron-Lizotte, Marie-Pierre Hardy, P. Diana Granados, Chantal Durette, Sébastien Lemieux, Pierre Thibault, Claude Perreault (2016). Global proteogenomic analysis of human MHC class I-associated peptides derived from non-canonical reading frames. Nature Communications.

Alexandre Rouette, Assya Trofimov, David Haberl, Geneviève Boucher, Vincent-Philippe Lavallée, Giovanni D'Angelo, Josée Hébert, Guy Sauvageau, Sébastien Lemieux, Claude Perreault (2016). Expression of immunoproteasome genes is regulated by cell-intrinsic and –extrinsic factors in human cancers. Scientific Reports.

Vincent-Philippe Lavallée, Jana Krosl, Sébastien Lemieux, Geneviève Boucher, Patrick Gendron, Caroline Pabst, Isabel Boivin, Anne Marinier, J. Cynthia Guidos, Sylvain Meloche, Josée Hébert, Guy Sauvageau (2016). Chemo-genomic interrogation of CEBPA mutated AML reveals recurrent CSF3R mutations and subgroup sensitivity to JAK inhibitors. Blood.

Vincent-Philippe Lavallée, Irène Baccelli, Jana Krosl, Brian Wilhelm, Frédéric Barabé, Patrick Gendron, Geneviève Boucher, Sébastien Lemieux, Anne Marinier, Sylvain Meloche, Josée Hébert, Guy Sauvageau (2015). The transcriptomic landscape and directed chemical interrogation of MLL-rearranged acute myeloid leukemias. Nature Genetics.

Eric Bonneau, Nicolas Girard, Sébastien Lemieux, Pascale Legault (2015). The NMR structure of the II–III–VI three-way junction from the Neurospora VS ribozyme reveals a critical tertiary interaction and provides new insights into the global ribozyme structure. RNA.

Vincent-Philippe Lavallée, Patrick Gendron, Sébastien Lemieux, Giovanni D'Angelo, Josée Hébert, Guy Sauvageau (2015). EVI1-rearranged acute myeloid leukemias are characterized by distinct molecular alterations. Blood.

Charles St-Pierre, Assya Trofimov, Sylvie Brochu, Sébastien Lemieux, Claude Perreault (2015). Differential Features of AIRE-Induced and AIRE-Independent Promiscuous Gene Expression in Thymic Epithelial Cells. Journal of Immunology (Baltimore Md.: 1950).

Bastien Gerby, S. Cedric Tremblay, Mathieu Tremblay, Shanti Rojas-Sutterlin, Sabine Herblot, Josée Hébert, Guy Sauvageau, Sébastien Lemieux, Eric Lécuyer, T. F. Diogo Veiga, Trang Hoang (2014). SCL LMO1 and Notch1 Reprogram Thymocytes into Self-Renewing Cells. PLoS Genetics.

Paola Diana Granados, Dev Sriranganadane, Tariq Daouda, Antoine Zieger, M. Céline Laumont, Olivier Caron-Lizotte, Geneviève Boucher, Marie-Pierre Hardy, Patrick Gendron, Caroline Côté, Sébastien Lemieux, Pierre Thibault, Claude Perreault (2014). Impact of genomic polymorphisms on the repertoire of human MHC class I-associated peptides. Nature Communications.

Caroline Pabst, Jana Krosl, Iman Fares, Geneviève Boucher, Réjean Ruel, Anne Marinier, Sébastien Lemieux, Josée Hébert, Guy Sauvageau (2014). Identification of small molecules that support human leukemia stem cell activity ex vivo. Nature Methods.

Dariel Ashton-Beaucage, M. Christian Udell, Patrick Gendron, Malha Sahmi, Martin Lefrançois, Caroline Baril, Anne-Sophie Guenier, Jean Duchaine, Daniel Lamarre, Sébastien Lemieux, Marc Therrien (2014). A functional screen reveals an extensive layer of transcriptional and splicing control underlying RAS/MAPK signaling in Drosophila. PLoS biology.

Charles St-Pierre, Sylvie Brochu, Ruiz Juan Vanegas, Maude Dumont-Lagacé, Sébastien Lemieux, Claude Perreault (2013). Transcriptome sequencing of neonatal thymic epithelial cells. Scientific Reports.

Tara Macrae, Tobias Sargeant, Sébastien Lemieux, Josée Hébert, Eric Deneault, Guy Sauvageau (2013). RNA-Seq reveals spliceosome and proteasome genes as most consistent transcripts in human cancer cells. PloS One.

Mathieu Courcelles, Christophe Frémin, Laure Voisin, Sébastien Lemieux, Sylvain Meloche, Pierre Thibault (2013). Phosphoproteome dynamics reveal novel ERK1/2 MAP kinase substrates with broad spectrum of functions. Molecular Systems Biology.

Nocq Julie, Celton Magalie, Gendron Patrick, Lemieux Sebastien (2013). Harnessing virtual machines to simplify next-generation DNA sequencing analysis. Bioinformatics (Oxford England).

Lacombe Julie, Krosl Gorazd, Tremblay Mathieu, Gerby Bastien, Martin Richard, Lemieux Sebastien, Hoang Trang (2013). Genetic interaction between Kit and Scl. Blood.

Leucegene Project (2013). Funding considerations for the disclosure of genetic incidental findings in biobank research. Clinical Genetics.

Philippe Serhal, Sébastien Lemieux (2013). Correction of spatial bias in oligonucleotide array data. Advances in Bioinformatics.

Mathieu Courcelles, Gaëlle Bridon, Sébastien Lemieux, Pierre Thibault (2012). Occurrence and Detection of Phosphopeptide Isomers in Large-Scale Phosphoproteomics Experiments. Journal of Proteome Research.

Paola Diana Granados, Wafaa Yahyaoui, M. Céline Laumont, Tariq Daouda, L. Tara Muratore-Schroeder, Caroline Côté, Jean-Philippe Laverdure, Sébastien Lemieux, Pierre Thibault, Claude Perreault (2012). MHC I-associated peptides preferentially derive from transcripts bearing miRNA response elements. Blood.

Julie Lacroix-Labonté, Nicolas Girard, Sébastien Lemieux, Pascale Legault (2012). Helix-length compensation studies reveal the adaptability of the VS ribozyme architecture. Nucleic Acids Research.

Camille Simon, Jalila Chagraoui, Jana Krosl, Patrick Gendron, Brian Wilhelm, Sébastien Lemieux, Geneviève Boucher, Pierre Chagnon, Simon Drouin, Raphaëlle Lambert, Claude Rondeau, Annie Bilodeau, Sylvie Lavallée, Martin Sauvageau, Josée Hébert, Guy Sauvageau (2012). A key role for EZH2 and associated genes in mouse and human adult T-cell acute leukemia. Genes & Development.

Etienne Caron, Krystel Vincent, Marie-Hélène Fortier, Jean-Philippe Laverdure, Alexandre Bramoullé, Marie-Pierre Hardy, Grégory Voisin, P. Philippe Roux, Sébastien Lemieux, Pierre Thibault, Claude Perreault (2011). The MHC I immunopeptidome conveys to the cell surface an integrative view of cellular regulation. Molecular Systems Biology.

Mathieu Courcelles, Sébastien Lemieux, Laure Voisin, Sylvain Meloche, Pierre Thibault (2011). ProteoConnections - a bioinformatics platform to facilitate proteome and phosphoproteome analyses. Proteomics.

Danielle Verteuil de, L. Tara Muratore-Schroeder, P. Diana Granados, Marie-Hélène Fortier, Marie-Pierre Hardy, Alexandre Bramoullé, Etienne Caron, Krystel Vincent, Sylvie Mader, Sébastien Lemieux, Pierre Thibault, Claude Perreault (2010). Deletion of immunoproteasome subunits imprints on the transcriptome and has a broad impact on peptides presented by major histocompatibility complex I molecules. Molecular & cellular proteomics.

Etienne Caron, Samik Ghosh, Yukiko Matsuoka, Dariel Ashton-Beaucage, Marc Therrien, Sébastien Lemieux, Claude Perreault, P. Philippe Roux, Hiroaki Kitano (2010). A comprehensive map of the mTOR signaling network. Molecular Systems Biology.

Matthias Trost, Luc English, Sébastien Lemieux, Mathieu Courcelles, Michel Desjardins, Pierre Thibault (2009). The phagosomal proteome in interferon-gamma-activated macrophages. Immunity.

Katharina Trunk, Patrick Gendron, André Nantel, Sébastien Lemieux, Terry Roemer, Martine Raymond (2009). Depletion of the cullin Cdc53p induces morphogenetic changes in Candida albicans. Eukaryotic Cell.

Marie-Hélène Fortier, Etienne Caron, Marie-Pierre Hardy, Grégory Voisin, Sébastien Lemieux, Claude Perreault, Pierre Thibault (2008). The MHC class I peptide repertoire is molded by the transcriptome. The Journal of Experimental Medicine.

Patricia Bouchard, Julie Lacroix-Labonté, Geneviève Desjardins, Philipe Lampron, Véronique Lisi, Sébastien Lemieux, François Major, Pascale Legault (2008). Role of SLV in SLI substrate recognition by the Neurospora VS ribozyme. RNA (New York N.Y.).

Martin Sauvageau, Michelle Miller, Sébastien Lemieux, Julie Lessard, Josée Hébert, Guy Sauvageau (2008). Quantitative expression profiling guided by common retroviral insertion sites reveals novel and cell type specific cancer genes in leukemia. Blood.

Sadri Znaidi, Sandra Weber, Zin Osman Al-Abdin, Perrine Bomme, Saloua Saidane, Simon Drouin, Sébastien Lemieux, Xavier Deken De, François Robert, Martine Raymond (2008). Genomewide location analysis of Candida albicans Upc2p a regulator of sterol metabolism and azole drug resistance. Eukaryotic Cell.

Xu Deming, Jiang Bo, Ketela Troy, Lemieux Sebastien, Veillette Karynn, Martel Nick, Davison John, Sillaots Susan, Trosok Steve, Bachewich Catherine, Bussey Howard, Youngman Phil, Roemer Terry (2007). Genome-Wide Fitness Test and Mechanism-of-Action Studies of Inhibitory Compounds in Candida albicans. PLOS Pathogens.

Madeleine Héroux, Mireille Hogue, Sébastien Lemieux, Michel Bouvier (2007). Functional calcitonin gene-related peptide receptors are formed by the asymmetric assembly of a calcitonin receptor-like receptor homo-oligomer and a monomer of receptor activity-modifying protein-1. The Journal of Biological Chemistry.

Hu Wenqi, Sillaots Susan, Lemieux Sebastien, Davison John, Kauffman Sarah, Breton Anouk, Linteau Annie, Xin Chunlin, Bowman Joel, Becker Jeff, Jiang Bo, Roemer Terry (2007). Essential gene identification and drug target prioritization in Aspergillus fumigatus. PLoS pathogens.

Sébastien Lemieux (2006). Probe-level linear model fitting and mixture modeling results in high accuracy detection of differential gene expression. BMC Bioinformatics.

Sébastien Lemieux, François Major (2006). Automated extraction and classification of RNA tertiary structure cyclic motifs. Nucleic Acids Research.

Sébastien Lemieux, François Major (2002). RNA canonical and non-canonical base pairing types - a recognition method and complete repertoire. Nucleic Acids Research.